J3_6FTG_025

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FTG_025 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.149

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

6FTG|1|u|A|2598
6FTG|1|u|G|2599
6FTG|1|u|A|2600
6FTG|1|u|A|2601
6FTG|1|u|G|2602
*
6FTG|1|u|C|2737
6FTG|1|u|C|2738
*
6FTG|1|u|G|2742
6FTG|1|u|A|2743
6FTG|1|u|A|2744
6FTG|1|u|A|2745
6FTG|1|u|A|2746
6FTG|1|u|U|2747

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain g

eL34

Chain p

Ribosomal protein L37a