J3_6FTI_021
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UU*AGAAG*CGUGG
- Length
- 12 nucleotides
- Bulged bases
- 6FTI|1|u|A|1805, 6FTI|1|u|U|1834
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTI_021 not in the Motif Atlas
- Homologous match to J3_9PN5_010
- Geometric discrepancy: 0.3932
- The information below is about J3_9PN5_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_22278.2
- Basepair signature
- cWW-cWW-cHW-F-cSS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6FTI|1|u|U|1726
6FTI|1|u|U|1727
*
6FTI|1|u|A|1802
6FTI|1|u|G|1803
6FTI|1|u|A|1804
6FTI|1|u|A|1805
6FTI|1|u|G|1806
*
6FTI|1|u|C|1832
6FTI|1|u|G|1833
6FTI|1|u|U|1834
6FTI|1|u|G|1835
6FTI|1|u|G|1836
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain F
- uL30
- Chain T
- eL21
- Chain b
- 60S ribosomal protein L29
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