J3_6FTJ_005
3D structure
- PDB id
- 6FTJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- UGAACUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 6FTJ|1|u|A|1534, 6FTJ|1|u|G|1641
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6FTJ_005 not in the Motif Atlas
- Homologous match to J3_5TBW_004
- Geometric discrepancy: 0.0688
- The information below is about J3_5TBW_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_39238.5
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FTJ|1|u|U|1531
6FTJ|1|u|G|1532
6FTJ|1|u|A|1533
6FTJ|1|u|A|1534
6FTJ|1|u|C|1535
6FTJ|1|u|U|1536
6FTJ|1|u|A|1537
*
6FTJ|1|u|U|1622
6FTJ|1|u|A|1623
6FTJ|1|u|G|1624
*
6FTJ|1|u|C|1640
6FTJ|1|u|G|1641
6FTJ|1|u|A|1642
6FTJ|1|u|A|1643
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: