J3_6FTJ_007

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6FTJ|1|u|A|2396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FTJ_007 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.0839

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6FTJ|1|u|C|2393
6FTJ|1|u|G|2394
6FTJ|1|u|A|2395
6FTJ|1|u|A|2396
6FTJ|1|u|G|2397
6FTJ|1|u|U|2398
6FTJ|1|u|G|2399
*
6FTJ|1|u|C|2805
6FTJ|1|u|A|2806
6FTJ|1|u|A|2807
*
6FTJ|1|u|U|2819
6FTJ|1|u|C|2820
6FTJ|1|u|U|2821
6FTJ|1|u|G|2822

Current chains

Chain u

28S rRNA

Nearby chains

Chain R

eL19

Chain g

eL34