J3_6FTJ_010

3D structure

PDB id

6FTJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Non-programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FTJ_010 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.3597

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6FTJ|1|u|U|2575
6FTJ|1|u|G|2576
*
6FTJ|1|u|C|2585
6FTJ|1|u|G|2586
6FTJ|1|u|A|2587
6FTJ|1|u|C|2588
6FTJ|1|u|C|2589
*
6FTJ|1|u|G|2756
6FTJ|1|u|A|2757

Current chains

Chain u

28S rRNA

Nearby chains

Chain Z

60S ribosomal protein L27

Chain g

eL34