J3_6FXC_005

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_005 not in the Motif Atlas

Homologous match to J3_4WF9_003

Geometric discrepancy: 0.0779

The information below is about J3_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

6FXC|1|AA|C|743
6FXC|1|AA|A|744
6FXC|1|AA|G|745
*
6FXC|1|AA|C|777
6FXC|1|AA|G|778
6FXC|1|AA|A|779
6FXC|1|AA|A|780
6FXC|1|AA|C|781
*
6FXC|1|AA|G|805
6FXC|1|AA|A|806
6FXC|1|AA|U|807
6FXC|1|AA|G|808

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2