J3_6FXC_028

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAUCUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6FXC|1|BA|U|731, 6FXC|1|BA|G|837, 6FXC|1|BA|A|838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_028 not in the Motif Atlas

Homologous match to J3_4WF9_002

Geometric discrepancy: 0.0991

The information below is about J3_4WF9_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6FXC|1|BA|U|728
6FXC|1|BA|G|729
6FXC|1|BA|A|730
6FXC|1|BA|U|731
6FXC|1|BA|C|732
6FXC|1|BA|U|733
6FXC|1|BA|A|734
*
6FXC|1|BA|U|818
6FXC|1|BA|A|819
6FXC|1|BA|G|820
*
6FXC|1|BA|C|836
6FXC|1|BA|G|837
6FXC|1|BA|A|838
6FXC|1|BA|A|839

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2