J3_6FXC_031

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

6FXC|1|BA|A|1653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_031 not in the Motif Atlas

Homologous match to J3_4WF9_005

Geometric discrepancy: 0.1465

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

6FXC|1|BA|C|1342
6FXC|1|BA|U|1343
6FXC|1|BA|A|1344
6FXC|1|BA|A|1345
6FXC|1|BA|G|1346
*
6FXC|1|BA|C|1649
6FXC|1|BA|G|1650
6FXC|1|BA|C|1651
6FXC|1|BA|A|1652
6FXC|1|BA|A|1653
6FXC|1|BA|A|1654
6FXC|1|BA|C|1655
*
6FXC|1|BA|G|1664
6FXC|1|BA|U|1665
6FXC|1|BA|A|1666
6FXC|1|BA|G|1667

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34