J3_6FXC_034

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6FXC|1|BA|A|2545

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_034 not in the Motif Atlas

Homologous match to J3_4WF9_009

Geometric discrepancy: 0.086

The information below is about J3_4WF9_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

6FXC|1|BA|C|2544
6FXC|1|BA|A|2545
6FXC|1|BA|U|2546
6FXC|1|BA|C|2547
*
6FXC|1|BA|G|2572
6FXC|1|BA|U|2573
6FXC|1|BA|U|2574
*
6FXC|1|BA|A|2588
6FXC|1|BA|U|2589
6FXC|1|BA|U|2590
6FXC|1|BA|A|2591
6FXC|1|BA|A|2592
6FXC|1|BA|A|2593
6FXC|1|BA|G|2594

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L14