J3_6FXC_063

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UCGGGUCC*GGAUAA*UA

Length

16 nucleotides

Bulged bases

6FXC|1|BA|C|1387, 6FXC|1|BA|A|1421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_063 not in the Motif Atlas

Homologous match to J3_4WF9_016

Geometric discrepancy: 0.5939

The information below is about J3_4WF9_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

6FXC|1|BA|U|1381
6FXC|1|BA|C|1382
6FXC|1|BA|G|1383
6FXC|1|BA|G|1384
6FXC|1|BA|G|1385
6FXC|1|BA|U|1386
6FXC|1|BA|C|1387
6FXC|1|BA|C|1388
*
6FXC|1|BA|G|1417
6FXC|1|BA|G|1418
6FXC|1|BA|A|1419
6FXC|1|BA|U|1420
6FXC|1|BA|A|1421
6FXC|1|BA|A|1422
*
6FXC|1|BA|U|1439
6FXC|1|BA|A|1440

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L23