J3_6FXC_071

3D structure

PDB id

6FXC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FXC_071 not in the Motif Atlas

Homologous match to J3_4LFB_017

Geometric discrepancy: 0.1775

The information below is about J3_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_79369.1

Basepair signature

cWW-cWW-tSS-F-F-cWW-F

Number of instances in this motif group

1

Unit IDs

6FXC|1|Ba|U|1084
6FXC|1|Ba|G|1085
*
6FXC|1|Ba|U|1094
6FXC|1|Ba|G|1095
6FXC|1|Ba|U|1096
6FXC|1|Ba|U|1097
*
6FXC|1|Ba|G|1110
6FXC|1|Ba|C|1111
6FXC|1|Ba|A|1112
6FXC|1|Ba|A|1113

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bb

30S ribosomal protein S2

Chain Be

30S ribosomal protein S5