J3_6FYX_011

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACUG*CGUGCUGG*C(2MG)AG

Length

17 nucleotides

Bulged bases

6FYX|1|2|U|1471

QA status

Modified nucleotides: 2MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6FYX_011 not in the Motif Atlas

Homologous match to J3_8C3A_044

Geometric discrepancy: 0.2062

The information below is about J3_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

6FYX|1|2|C|1468
6FYX|1|2|A|1469
6FYX|1|2|C|1470
6FYX|1|2|U|1471
6FYX|1|2|G|1472
*
6FYX|1|2|C|1531
6FYX|1|2|G|1532
6FYX|1|2|U|1533
6FYX|1|2|G|1534
6FYX|1|2|C|1535
6FYX|1|2|U|1536
6FYX|1|2|G|1537
6FYX|1|2|G|1538
*
6FYX|1|2|C|1569
6FYX|1|2|2MG|1570
6FYX|1|2|A|1571
6FYX|1|2|G|1572

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

KLLA0D10659p

Chain S

KLLA0B01562p

Chain T

KLLA0A07194p

Chain Z

KLLA0B06182p