3D structure

PDB id
6FYY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.02 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
6FYY|1|2|U|863
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6FYY_001 not in the Motif Atlas
Homologous match to J3_8C3A_034
Geometric discrepancy: 0.1505
The information below is about J3_8C3A_034
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.2
Basepair signature
cWW-tSH-cWW-tHW-cWW-cWW-F
Number of instances in this motif group
7

Unit IDs

6FYY|1|2|U|632
6FYY|1|2|G|633
6FYY|1|2|A|634
*
6FYY|1|2|U|860
6FYY|1|2|A|861
6FYY|1|2|A|862
6FYY|1|2|U|863
6FYY|1|2|A|864
6FYY|1|2|G|865
*
6FYY|1|2|C|961
6FYY|1|2|A|962
6FYY|1|2|U|963
6FYY|1|2|U|964
6FYY|1|2|A|965

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain H
40S ribosomal protein S7
Chain L
KLLA0A10483p
Chain N
KLLA0F18040p
Chain W
40S ribosomal protein S22
Chain X
KLLA0B11231p
Chain b
40S ribosomal protein S27

Coloring options:


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