J3_6G5H_002

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G5H_002 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.2226

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6G5H|1|2|A|816
6G5H|1|2|G|817
6G5H|1|2|A|818
6G5H|1|2|G|819
*
6G5H|1|2|C|829
6G5H|1|2|A|830
6G5H|1|2|G|831
*
6G5H|1|2|C|843
6G5H|1|2|U|844
6G5H|1|2|G|845
6G5H|1|2|G|846
6G5H|1|2|A|847
6G5H|1|2|U|848

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E

40S ribosomal protein S4, X isoform

Chain J

40S ribosomal protein S9

Chain Y

40S ribosomal protein S24