J3_6G5H_005

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G5H_005 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1271

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6G5H|1|2|C|1218
6G5H|1|2|C|1219
6G5H|1|2|A|1220
6G5H|1|2|G|1221
*
6G5H|1|2|C|1645
6G5H|1|2|C|1646
6G5H|1|2|A|1647
6G5H|1|2|G|1648
6G5H|1|2|U|1649
6G5H|1|2|A|1650
6G5H|1|2|A|1651
*
6G5H|1|2|U|1673
6G5H|1|2|G|1674
6G5H|1|2|A|1675
6G5H|1|2|U|1676
6G5H|1|2|U|1677
6G5H|1|2|A|1678
6G5H|1|2|A|1679
6G5H|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16

Chain c

40S ribosomal protein S28