J3_6G5H_008

3D structure

PDB id

6G5H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a late human pre-40S ribosomal subunit - Mature

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6G5H|1|2|G|1274, 6G5H|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6G5H_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.198

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6G5H|1|2|C|1272
6G5H|1|2|C|1273
6G5H|1|2|G|1274
6G5H|1|2|G|1275
6G5H|1|2|A|1276
6G5H|1|2|C|1277
*
6G5H|1|2|G|1320
6G5H|1|2|G|1321
6G5H|1|2|G|1322
6G5H|1|2|U|1323
6G5H|1|2|G|1324
*
6G5H|1|2|U|1504
6G5H|1|2|U|1505
6G5H|1|2|A|1506
6G5H|1|2|G|1507
6G5H|1|2|A|1508
6G5H|1|2|U|1509
6G5H|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

Ribosomal protein S27a