J3_6GAW_004

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GAW_004 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1038

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GAW|1|AA|A|549
6GAW|1|AA|G|550
6GAW|1|AA|G|551
6GAW|1|AA|A|552
*
6GAW|1|AA|U|719
6GAW|1|AA|A|720
6GAW|1|AA|C|721
*
6GAW|1|AA|G|781
6GAW|1|AA|G|782
6GAW|1|AA|A|783
6GAW|1|AA|U|784

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AI

28S ribosomal protein S9, mitochondrial

Chain AV

P-site fMet-tRNAMet, mitochondrial