J3_6GAZ_004

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GAZ_004 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1013

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44359.1

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GAZ|1|AA|A|549
6GAZ|1|AA|G|550
6GAZ|1|AA|G|551
6GAZ|1|AA|A|552
*
6GAZ|1|AA|U|719
6GAZ|1|AA|A|720
6GAZ|1|AA|C|721
*
6GAZ|1|AA|G|781
6GAZ|1|AA|G|782
6GAZ|1|AA|A|783
6GAZ|1|AA|U|784

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AI

Mitochondrial ribosomal protein S9

Chain AV

P-site fMet-tRNAMet, mitochondrial