J3_6GB2_006

3D structure

PDB id

6GB2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 39S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CACC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

6GB2|1|BA|A|1341, 6GB2|1|BA|C|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GB2_006 not in the Motif Atlas

Homologous match to J3_7RQB_012

Geometric discrepancy: 0.0821

The information below is about J3_7RQB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.3

Basepair signature

cWW-tWH-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

6GB2|1|BA|C|1340
6GB2|1|BA|A|1341
6GB2|1|BA|C|1342
6GB2|1|BA|C|1343
*
6GB2|1|BA|G|1368
6GB2|1|BA|U|1369
6GB2|1|BA|U|1370
*
6GB2|1|BA|A|1384
6GB2|1|BA|U|1385
6GB2|1|BA|U|1386
6GB2|1|BA|A|1387
6GB2|1|BA|A|1388
6GB2|1|BA|A|1389
6GB2|1|BA|G|1390

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain BO

Mitochondrial ribosomal protein L14

Chain Bt

Mitochondrial ribosomal protein L57

Chain Bx

Mitochondrial ribosomal protein S18A