J3_6GC4_008

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GC4_008 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.1907

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GC4|1|A|C|2091
6GC4|1|A|U|2092
6GC4|1|A|G|2093
*
6GC4|1|A|C|2196
6GC4|1|A|U|2197
6GC4|1|A|A|2198
6GC4|1|A|A|2199
6GC4|1|A|C|2200
*
6GC4|1|A|G|2223
6GC4|1|A|G|2224
6GC4|1|A|A|2225
6GC4|1|A|C|2226
6GC4|1|A|A|2227
6GC4|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28