J3_6GQ1_004

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGAACUA*UAG*CGAA

Length

14 nucleotides

Bulged bases

6GQ1|1|1|A|817, 6GQ1|1|1|G|924

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQ1_004 not in the Motif Atlas

Homologous match to J3_8C3A_003

Geometric discrepancy: 0.1394

The information below is about J3_8C3A_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.5

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

6GQ1|1|1|U|814
6GQ1|1|1|G|815
6GQ1|1|1|A|816
6GQ1|1|1|A|817
6GQ1|1|1|C|818
6GQ1|1|1|U|819
6GQ1|1|1|A|820
*
6GQ1|1|1|U|905
6GQ1|1|1|A|906
6GQ1|1|1|G|907
*
6GQ1|1|1|C|923
6GQ1|1|1|G|924
6GQ1|1|1|A|925
6GQ1|1|1|A|926

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain N

60S ribosomal protein L15-A

Chain j

60S ribosomal protein L37-A