J3_6GQ1_020

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AGAG*CAG*UCGAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQ1_020 not in the Motif Atlas

Homologous match to J3_4V88_032

Geometric discrepancy: 0.1737

The information below is about J3_4V88_032

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_54972.1

Basepair signature

cWW-tWW-F-cWW-F-tHS-F-cWW

Number of instances in this motif group

2

Unit IDs

6GQ1|1|2|A|760
6GQ1|1|2|G|761
6GQ1|1|2|A|762
6GQ1|1|2|G|763
*
6GQ1|1|2|C|773
6GQ1|1|2|A|774
6GQ1|1|2|G|775
*
6GQ1|1|2|U|785
6GQ1|1|2|C|786
6GQ1|1|2|G|787
6GQ1|1|2|A|788
6GQ1|1|2|A|789
6GQ1|1|2|U|790

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain u

40S ribosomal protein S4-A

Chain z

40S ribosomal protein S9-A