J3_6GQB_001
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAAAUUUGAAA*UAAUUUGGAG*CGAAG
- Length
- 26 nucleotides
- Bulged bases
- 6GQB|1|1|U|117, 6GQB|1|1|G|156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQB_001 not in the Motif Atlas
- Homologous match to J3_8C3A_001
- Geometric discrepancy: 0.183
- The information below is about J3_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88489.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-tWH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
6GQB|1|1|C|113
6GQB|1|1|A|114
6GQB|1|1|A|115
6GQB|1|1|A|116
6GQB|1|1|U|117
6GQB|1|1|U|118
6GQB|1|1|U|119
6GQB|1|1|G|120
6GQB|1|1|A|121
6GQB|1|1|A|122
6GQB|1|1|A|123
*
6GQB|1|1|U|149
6GQB|1|1|A|150
6GQB|1|1|A|151
6GQB|1|1|U|152
6GQB|1|1|U|153
6GQB|1|1|U|154
6GQB|1|1|G|155
6GQB|1|1|G|156
6GQB|1|1|A|157
6GQB|1|1|G|158
*
6GQB|1|1|C|263
6GQB|1|1|G|264
6GQB|1|1|A|265
6GQB|1|1|A|266
6GQB|1|1|G|267
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain L
- 60S ribosomal protein L13-A
- Chain N
- 60S ribosomal protein L15-A
- Chain h
- 60S ribosomal protein L35-A
- Chain i
- 60S ribosomal protein L36-A
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