J3_6GQB_007

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQB_007 not in the Motif Atlas

Homologous match to J3_5TBW_007

Geometric discrepancy: 0.3248

The information below is about J3_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.3

Basepair signature

cWW-tWW-tHS-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

7

Unit IDs

6GQB|1|1|G|1230
6GQB|1|1|A|1231
6GQB|1|1|C|1232
*
6GQB|1|1|G|1256
6GQB|1|1|C|1257
6GQB|1|1|U|1258
6GQB|1|1|A|1259
6GQB|1|1|A|1260
6GQB|1|1|G|1261
6GQB|1|1|G|1262
*
6GQB|1|1|C|1277
6GQB|1|1|A|1278
6GQB|1|1|C|1279

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain P0

60S acidic ribosomal protein P0

Chain P2

60S ribosomal protein L12-A