J3_6GQB_017

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GQB_017 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1169

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6GQB|1|2|A|41
6GQB|1|2|G|42
*
6GQB|1|2|C|433
6GQB|1|2|G|434
6GQB|1|2|C|435
6GQB|1|2|A|436
6GQB|1|2|A|437
6GQB|1|2|A|438
6GQB|1|2|U|439
*
6GQB|1|2|A|464
6GQB|1|2|G|465
6GQB|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AZ

Elongation factor 2

Chain z

40S ribosomal protein S9-A