J3_6GQV_029
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AC*GAUACGU*AAUCU
- Length
- 14 nucleotides
- Bulged bases
- 6GQV|1|4|C|62
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GQV_029 not in the Motif Atlas
- Homologous match to J3_8P4V_024
- Geometric discrepancy: 0.2081
- The information below is about J3_8P4V_024
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6GQV|1|4|A|44
6GQV|1|4|C|45
*
6GQV|1|4|G|58
6GQV|1|4|A|59
6GQV|1|4|U|60
6GQV|1|4|A|61
6GQV|1|4|C|62
6GQV|1|4|G|63
6GQV|1|4|U|64
*
6GQV|1|4|A|96
6GQV|1|4|A|97
6GQV|1|4|U|98
6GQV|1|4|C|99
6GQV|1|4|U|100
Current chains
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain X
- 60S ribosomal protein L25
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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