J3_6GSJ_056

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6GSJ|1|14|U|504, 6GSJ|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSJ_056 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0628

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6GSJ|1|14|G|30
6GSJ|1|14|C|31
*
6GSJ|1|14|G|474
6GSJ|1|14|U|475
6GSJ|1|14|G|476
6GSJ|1|14|A|477
6GSJ|1|14|A|478
6GSJ|1|14|A|479
6GSJ|1|14|A|480
6GSJ|1|14|G|481
6GSJ|1|14|A|482
6GSJ|1|14|A|483
6GSJ|1|14|C|484
*
6GSJ|1|14|G|496
6GSJ|1|14|A|497
6GSJ|1|14|G|498
6GSJ|1|14|U|499
6GSJ|1|14|G|500
6GSJ|1|14|A|501
6GSJ|1|14|A|502
6GSJ|1|14|A|503
6GSJ|1|14|U|504
6GSJ|1|14|A|505
6GSJ|1|14|G|506
6GSJ|1|14|A|507
6GSJ|1|14|G|508
6GSJ|1|14|C|509
6GSJ|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24