J3_6GSJ_064

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6GSJ|1|1G|U|992, 6GSJ|1|1G|U|1212

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSJ_064 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.5734

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6GSJ|1|1G|C|990
6GSJ|1|1G|U|991
6GSJ|1|1G|U|992
6GSJ|1|1G|G|993
6GSJ|1|1G|A|994
6GSJ|1|1G|C|995
6GSJ|1|1G|A|996
6GSJ|1|1G|U|997
*
6GSJ|1|1G|A|1044
6GSJ|1|1G|C|1045
6GSJ|1|1G|A|1046
6GSJ|1|1G|G|1047
*
6GSJ|1|1G|C|1210
6GSJ|1|1G|U|1211
6GSJ|1|1G|U|1212
6GSJ|1|1G|A|1213
6GSJ|1|1G|C|1214
6GSJ|1|1G|G|1215

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 5A

30S ribosomal protein S14 type Z