J3_6GSK_049

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

CC*GUGGAU*AAUCG

Length

13 nucleotides

Bulged bases

6GSK|1|1H|G|2833

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSK_049 not in the Motif Atlas

Homologous match to J3_9DFE_019

Geometric discrepancy: 0.178

The information below is about J3_9DFE_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76911.2

Basepair signature

cWW-tHS-F-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6GSK|1|1H|C|2814
6GSK|1|1H|C|2815
*
6GSK|1|1H|G|2831
6GSK|1|1H|U|2832
6GSK|1|1H|G|2833
6GSK|1|1H|G|2834
6GSK|1|1H|A|2835
6GSK|1|1H|U|2836
*
6GSK|1|1H|A|2882
6GSK|1|1H|A|2883
6GSK|1|1H|U|2884
6GSK|1|1H|C|2885
6GSK|1|1H|G|2886

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L3

Chain 98

50S ribosomal protein L17

Chain N8

50S ribosomal protein L32