J3_6GSL_029

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6GSL|1|1G|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_029 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1467

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6GSL|1|1G|C|826
6GSL|1|1G|U|827
6GSL|1|1G|A|828
6GSL|1|1G|G|829
*
6GSL|1|1G|C|857
6GSL|1|1G|G|858
6GSL|1|1G|A|859
6GSL|1|1G|A|860
6GSL|1|1G|G|861
*
6GSL|1|1G|C|868
6GSL|1|1G|G|869
6GSL|1|1G|U|870
6GSL|1|1G|U|871
6GSL|1|1G|A|872
6GSL|1|1G|A|873
6GSL|1|1G|G|874

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 12

30S ribosomal protein S2

Chain 42

30S ribosomal protein S5

Chain 72

30S ribosomal protein S8