J3_6GSL_057

3D structure

PDB id

6GSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAArg in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC

Length

28 nucleotides

Bulged bases

6GSL|1|14|U|504, 6GSL|1|14|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GSL_057 not in the Motif Atlas

Homologous match to J3_9DFE_002

Geometric discrepancy: 0.0984

The information below is about J3_9DFE_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92134.2

Basepair signature

cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GSL|1|14|G|30
6GSL|1|14|C|31
*
6GSL|1|14|G|474
6GSL|1|14|U|475
6GSL|1|14|G|476
6GSL|1|14|A|477
6GSL|1|14|A|478
6GSL|1|14|A|479
6GSL|1|14|A|480
6GSL|1|14|G|481
6GSL|1|14|A|482
6GSL|1|14|A|483
6GSL|1|14|C|484
*
6GSL|1|14|G|496
6GSL|1|14|A|497
6GSL|1|14|G|498
6GSL|1|14|U|499
6GSL|1|14|G|500
6GSL|1|14|A|501
6GSL|1|14|A|502
6GSL|1|14|A|503
6GSL|1|14|U|504
6GSL|1|14|A|505
6GSL|1|14|G|506
6GSL|1|14|A|507
6GSL|1|14|G|508
6GSL|1|14|C|509
6GSL|1|14|C|510

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 85

50S ribosomal protein L20

Chain A5

50S ribosomal protein L22

Chain C5

50S ribosomal protein L24