J3_6GSM_002
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 6GSM|1|2|U|863
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_002 not in the Motif Atlas
- Homologous match to J3_8C3A_034
- Geometric discrepancy: 0.2091
- The information below is about J3_8C3A_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.2
- Basepair signature
- cWW-tSH-cWW-tHW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
6GSM|1|2|U|632
6GSM|1|2|G|633
6GSM|1|2|A|634
*
6GSM|1|2|U|860
6GSM|1|2|A|861
6GSM|1|2|A|862
6GSM|1|2|U|863
6GSM|1|2|A|864
6GSM|1|2|G|865
*
6GSM|1|2|C|961
6GSM|1|2|A|962
6GSM|1|2|U|963
6GSM|1|2|U|964
6GSM|1|2|A|965
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain W
- 40S ribosomal protein S22
- Chain X
- RPS23
- Chain b
- 40S ribosomal protein S27
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