J3_6GSM_018
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 6GSM|1|2|A|1216, 6GSM|1|2|G|1443
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GSM_018 not in the Motif Atlas
- Homologous match to J3_8CRE_081
- Geometric discrepancy: 0.3835
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.3
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6GSM|1|2|C|1214
6GSM|1|2|C|1215
6GSM|1|2|A|1216
6GSM|1|2|G|1217
6GSM|1|2|A|1218
6GSM|1|2|C|1219
*
6GSM|1|2|G|1262
6GSM|1|2|G|1263
6GSM|1|2|G|1264
6GSM|1|2|U|1265
6GSM|1|2|G|1266
*
6GSM|1|2|U|1440
6GSM|1|2|U|1441
6GSM|1|2|A|1442
6GSM|1|2|G|1443
6GSM|1|2|A|1444
6GSM|1|2|C|1445
6GSM|1|2|G|1446
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- KLLA0B08173p
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
Coloring options: