J3_6GWT_033

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6GWT|1|a|U|1212, 6GWT|1|a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GWT_033 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1628

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6GWT|1|a|C|990
6GWT|1|a|U|991
6GWT|1|a|U|992
6GWT|1|a|G|993
6GWT|1|a|A|994
6GWT|1|a|C|995
6GWT|1|a|A|996
6GWT|1|a|U|997
*
6GWT|1|a|A|1044
6GWT|1|a|C|1045
6GWT|1|a|A|1046
6GWT|1|a|G|1047
*
6GWT|1|a|C|1210
6GWT|1|a|U|1211
6GWT|1|a|U|1212
6GWT|1|a|A|1213
6GWT|1|a|C|1214
6GWT|1|a|G|1215

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14

Chain v

Peptide chain release factor RF1