J3_6GXM_005

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6GXM|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXM_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1674

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GXM|1|A|C|1298
6GXM|1|A|G|1299
6GXM|1|A|G|1300
6GXM|1|A|A|1301
6GXM|1|A|A|1302
6GXM|1|A|G|1303
*
6GXM|1|A|C|1625
6GXM|1|A|A|1626
6GXM|1|A|G|1627
*
6GXM|1|A|C|1639
6GXM|1|A|A|1640
6GXM|1|A|A|1641
6GXM|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains