J3_6GXM_026

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6GXM|1|A|U|34, 6GXM|1|A|U|448, 6GXM|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXM_026 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1496

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6GXM|1|A|C|32
6GXM|1|A|C|33
6GXM|1|A|U|34
6GXM|1|A|G|35
*
6GXM|1|A|C|445
6GXM|1|A|G|446
6GXM|1|A|A|447
6GXM|1|A|U|448
6GXM|1|A|A|449
6GXM|1|A|G|450
6GXM|1|A|U|451
6GXM|1|A|G|452
6GXM|1|A|A|453
6GXM|1|A|A|454
6GXM|1|A|C|455
6GXM|1|A|C|456
6GXM|1|A|A|457
6GXM|1|A|G|458
6GXM|1|A|U|459
6GXM|1|A|A|460
6GXM|1|A|C|461
*
6GXM|1|A|G|468
6GXM|1|A|G|469
6GXM|1|A|A|470
6GXM|1|A|A|471
6GXM|1|A|A|472
6GXM|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23