J3_6GXN_005

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

6GXN|1|A|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXN_005 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1684

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6GXN|1|A|C|1298
6GXN|1|A|G|1299
6GXN|1|A|G|1300
6GXN|1|A|A|1301
6GXN|1|A|A|1302
6GXN|1|A|G|1303
*
6GXN|1|A|C|1625
6GXN|1|A|A|1626
6GXN|1|A|G|1627
*
6GXN|1|A|C|1639
6GXN|1|A|A|1640
6GXN|1|A|A|1641
6GXN|1|A|G|1642

Current chains

Chain A

23S ribosomal RNA

Nearby chains