J3_6GXN_008

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXN_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1292

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6GXN|1|A|C|2091
6GXN|1|A|U|2092
6GXN|1|A|G|2093
*
6GXN|1|A|C|2196
6GXN|1|A|U|2197
6GXN|1|A|A|2198
6GXN|1|A|A|2199
6GXN|1|A|C|2200
*
6GXN|1|A|G|2223
6GXN|1|A|G|2224
6GXN|1|A|A|2225
6GXN|1|A|C|2226
6GXN|1|A|A|2227
6GXN|1|A|G|2228

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28