3D structure

PDB id
6GXN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
GAAC*GUUGAU*AAUGAAC
Length
17 nucleotides
Bulged bases
6GXN|1|A|U|2833, 6GXN|1|A|A|2835
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6GXN_012 not in the Motif Atlas
Homologous match to J3_5J7L_048
Geometric discrepancy: 0.2001
The information below is about J3_5J7L_048
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_64069.1
Basepair signature
cWW-tHS-F-F-F-cWW-cWW-F-F
Number of instances in this motif group
1

Unit IDs

6GXN|1|A|G|2812
6GXN|1|A|A|2813
6GXN|1|A|A|2814
6GXN|1|A|C|2815
*
6GXN|1|A|G|2831
6GXN|1|A|U|2832
6GXN|1|A|U|2833
6GXN|1|A|G|2834
6GXN|1|A|A|2835
6GXN|1|A|U|2836
*
6GXN|1|A|A|2882
6GXN|1|A|A|2883
6GXN|1|A|U|2884
6GXN|1|A|G|2885
6GXN|1|A|A|2886
6GXN|1|A|A|2887
6GXN|1|A|C|2888

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3
Chain N
50S ribosomal protein L17
Chain S
50S ribosomal protein L22

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3758 s