J3_6GXN_026

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

6GXN|1|A|U|34, 6GXN|1|A|U|448, 6GXN|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GXN_026 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1501

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

6GXN|1|A|C|32
6GXN|1|A|C|33
6GXN|1|A|U|34
6GXN|1|A|G|35
*
6GXN|1|A|C|445
6GXN|1|A|G|446
6GXN|1|A|A|447
6GXN|1|A|U|448
6GXN|1|A|A|449
6GXN|1|A|G|450
6GXN|1|A|U|451
6GXN|1|A|G|452
6GXN|1|A|A|453
6GXN|1|A|A|454
6GXN|1|A|C|455
6GXN|1|A|C|456
6GXN|1|A|A|457
6GXN|1|A|G|458
6GXN|1|A|U|459
6GXN|1|A|A|460
6GXN|1|A|C|461
*
6GXN|1|A|G|468
6GXN|1|A|G|469
6GXN|1|A|A|470
6GXN|1|A|A|471
6GXN|1|A|A|472
6GXN|1|A|G|473

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23