J3_6GXO_017
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUUG*CGGAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 6GXO|1|a|U|871
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GXO_017 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1452
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
6GXO|1|a|C|826
6GXO|1|a|U|827
6GXO|1|a|U|828
6GXO|1|a|G|829
*
6GXO|1|a|C|857
6GXO|1|a|G|858
6GXO|1|a|G|859
6GXO|1|a|A|860
6GXO|1|a|G|861
*
6GXO|1|a|C|868
6GXO|1|a|G|869
6GXO|1|a|U|870
6GXO|1|a|U|871
6GXO|1|a|A|872
6GXO|1|a|A|873
6GXO|1|a|G|874
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S2
- Chain h
- 30S ribosomal protein S8
- Chain u
- 30S ribosomal protein S21
Coloring options: