J3_6GZ3_017
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6GZ3|1|A3|A|62, 6GZ3|1|A3|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ3_017 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.2091
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6GZ3|1|A3|A|44
6GZ3|1|A3|C|45
*
6GZ3|1|A3|G|58
6GZ3|1|A3|A|59
6GZ3|1|A3|G|60
6GZ3|1|A3|A|61
6GZ3|1|A3|A|62
6GZ3|1|A3|U|63
6GZ3|1|A3|U|64
*
6GZ3|1|A3|A|95
6GZ3|1|A3|C|96
6GZ3|1|A3|A|97
6GZ3|1|A3|C|98
6GZ3|1|A3|U|99
Current chains
- Chain A3
- 5.8S ribosomal RNA
Nearby chains
- Chain AX
- ribosomal protein uL23
- Chain Ah
- ribosomal protein uL29
- Chain Aj
- Ribosomal protein L37
- Chain Al
- ribosomal protein eL39
Coloring options: