J3_6GZ3_024

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ3_024 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1765

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GZ3|1|B1|C|1218
6GZ3|1|B1|C|1219
6GZ3|1|B1|A|1220
6GZ3|1|B1|G|1221
*
6GZ3|1|B1|C|1645
6GZ3|1|B1|C|1646
6GZ3|1|B1|A|1647
6GZ3|1|B1|G|1648
6GZ3|1|B1|U|1649
6GZ3|1|B1|A|1650
6GZ3|1|B1|A|1651
*
6GZ3|1|B1|U|1673
6GZ3|1|B1|G|1674
6GZ3|1|B1|A|1675
6GZ3|1|B1|U|1676
6GZ3|1|B1|U|1677
6GZ3|1|B1|A|1678
6GZ3|1|B1|A|1679
6GZ3|1|B1|G|1680

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

Ribosomal protein S5

Chain BQ

ribosomal protein uS9

Chain Bc

Ribosomal protein S28