J3_6GZ3_027

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6GZ3|1|B1|G|1274, 6GZ3|1|B1|G|1507, 6GZ3|1|B1|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ3_027 not in the Motif Atlas

Homologous match to J3_8C3A_041

Geometric discrepancy: 0.1277

The information below is about J3_8C3A_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_23728.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6GZ3|1|B1|C|1272
6GZ3|1|B1|C|1273
6GZ3|1|B1|G|1274
6GZ3|1|B1|G|1275
6GZ3|1|B1|A|1276
6GZ3|1|B1|C|1277
*
6GZ3|1|B1|G|1320
6GZ3|1|B1|G|1321
6GZ3|1|B1|G|1322
6GZ3|1|B1|U|1323
6GZ3|1|B1|G|1324
*
6GZ3|1|B1|U|1504
6GZ3|1|B1|U|1505
6GZ3|1|B1|A|1506
6GZ3|1|B1|G|1507
6GZ3|1|B1|A|1508
6GZ3|1|B1|U|1509
6GZ3|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

ribosomal protein eS10

Chain Bd

ribosomal protein uS14

Chain Bf

Ribosomal protein S27a

Chain Ct

eukaryotic elongation factor 2 (eEF2)