J3_6GZ3_030

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

6GZ3|1|B1|U|1535, 6GZ3|1|B1|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ3_030 not in the Motif Atlas

Homologous match to J3_8C3A_044

Geometric discrepancy: 0.1416

The information below is about J3_8C3A_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.4

Basepair signature

cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F

Number of instances in this motif group

5

Unit IDs

6GZ3|1|B1|C|1532
6GZ3|1|B1|A|1533
6GZ3|1|B1|C|1534
6GZ3|1|B1|U|1535
6GZ3|1|B1|G|1536
*
6GZ3|1|B1|C|1597
6GZ3|1|B1|G|1598
6GZ3|1|B1|U|1599
6GZ3|1|B1|G|1600
6GZ3|1|B1|A|1601
6GZ3|1|B1|U|1602
6GZ3|1|B1|G|1603
6GZ3|1|B1|G|1604
*
6GZ3|1|B1|C|1635
6GZ3|1|B1|G|1636
6GZ3|1|B1|A|1637
6GZ3|1|B1|G|1638

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

Ribosomal protein S5

Chain BS

ribosomal protein uS13

Chain BT

ribosomal protein eS19

Chain BZ

ribosomal protein eS25