J3_6GZ4_005

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GCAG*CGUAG*UCCGAC

Length

15 nucleotides

Bulged bases

6GZ4|1|A2|A|1595

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_005 not in the Motif Atlas

Homologous match to J3_5TBW_005

Geometric discrepancy: 0.1618

The information below is about J3_5TBW_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_33851.1

Basepair signature

cWW-tSH-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

6GZ4|1|A2|G|1527
6GZ4|1|A2|C|1528
6GZ4|1|A2|A|1529
6GZ4|1|A2|G|1530
*
6GZ4|1|A2|C|1562
6GZ4|1|A2|G|1563
6GZ4|1|A2|U|1564
6GZ4|1|A2|A|1565
6GZ4|1|A2|G|1566
*
6GZ4|1|A2|U|1591
6GZ4|1|A2|C|1592
6GZ4|1|A2|C|1593
6GZ4|1|A2|G|1594
6GZ4|1|A2|A|1595
6GZ4|1|A2|C|1596

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain AR

ribosomal protein eL19

Chain Ag

ribosomal protein eL34

Chain Ap

ribosomal protein eL43