J3_6GZ4_009
3D structure
- PDB id
- 6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6GZ4_009 not in the Motif Atlas
- Homologous match to J3_5TBW_010
- Geometric discrepancy: 0.1904
- The information below is about J3_5TBW_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_70383.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
6GZ4|1|A2|U|2419
6GZ4|1|A2|C|2420
6GZ4|1|A2|G|2421
6GZ4|1|A2|G|2422
6GZ4|1|A2|U|2423
6GZ4|1|A2|C|2424
*
6GZ4|1|A2|G|2494
6GZ4|1|A2|G|2495
6GZ4|1|A2|A|2496
6GZ4|1|A2|G|2497
6GZ4|1|A2|U|2498
*
6GZ4|1|A2|A|2515
6GZ4|1|A2|A|2516
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AX
- ribosomal protein uL23
- Chain Ag
- ribosomal protein eL34
- Chain Ak
- ribosomal protein eL38
- Chain Al
- ribosomal protein eL39
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