J3_6GZ4_032

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGAUAGUCAACAAGUAC*GGAAAG*CUCG

Length

27 nucleotides

Bulged bases

6GZ4|1|A2|U|348, 6GZ4|1|A2|A|356, 6GZ4|1|A3|C|23

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_032 not in the Motif Atlas

Homologous match to J3_8P9A_045

Geometric discrepancy: 0.0714

The information below is about J3_8P9A_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.1

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

10

Unit IDs

6GZ4|1|A2|C|345
6GZ4|1|A2|G|346
6GZ4|1|A2|A|347
6GZ4|1|A2|U|348
6GZ4|1|A2|A|349
6GZ4|1|A2|G|350
6GZ4|1|A2|U|351
6GZ4|1|A2|C|352
6GZ4|1|A2|A|353
6GZ4|1|A2|A|354
6GZ4|1|A2|C|355
6GZ4|1|A2|A|356
6GZ4|1|A2|A|357
6GZ4|1|A2|G|358
6GZ4|1|A2|U|359
6GZ4|1|A2|A|360
6GZ4|1|A2|C|361
*
6GZ4|1|A2|G|368
6GZ4|1|A2|G|369
6GZ4|1|A2|A|370
6GZ4|1|A2|A|371
6GZ4|1|A2|A|372
6GZ4|1|A2|G|373
*
6GZ4|1|A3|C|21
6GZ4|1|A3|U|22
6GZ4|1|A3|C|23
6GZ4|1|A3|G|24

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AY

ribosomal protein uL24

Chain Aj

ribosomal protein eL37

Chain Al

ribosomal protein eL39