J3_6GZ4_033

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA

Length

28 nucleotides

Bulged bases

6GZ4|1|A2|G|403, 6GZ4|1|A2|G|407

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_033 not in the Motif Atlas

Homologous match to J3_8C3A_049

Geometric discrepancy: 0.3544

The information below is about J3_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GZ4|1|A2|U|374
6GZ4|1|A2|U|375
6GZ4|1|A2|G|376
6GZ4|1|A2|A|377
6GZ4|1|A2|A|378
6GZ4|1|A2|A|379
6GZ4|1|A2|A|380
6GZ4|1|A2|G|381
6GZ4|1|A2|A|382
6GZ4|1|A2|A|383
6GZ4|1|A2|C|384
*
6GZ4|1|A2|G|395
6GZ4|1|A2|A|396
6GZ4|1|A2|G|397
6GZ4|1|A2|U|398
6GZ4|1|A2|U|399
6GZ4|1|A2|C|400
6GZ4|1|A2|A|401
6GZ4|1|A2|A|402
6GZ4|1|A2|G|403
6GZ4|1|A2|A|404
6GZ4|1|A2|G|405
6GZ4|1|A2|G|406
6GZ4|1|A2|G|407
6GZ4|1|A2|C|408
6GZ4|1|A2|G|409
*
6GZ4|1|A3|C|19
6GZ4|1|A3|A|20

Current chains

Chain A2

28S ribosomal RNA

Chain A3

5.8S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AP

ribosomal protein uL22

Chain AY

ribosomal protein uL24

Chain Al

ribosomal protein eL39