J3_6GZ4_039

3D structure

PDB id

6GZ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-2 (TI-POST-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6GZ4_039 not in the Motif Atlas

Homologous match to J3_8C3A_055

Geometric discrepancy: 0.1834

The information below is about J3_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10980.1

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6GZ4|1|A2|A|2577
6GZ4|1|A2|G|2578
6GZ4|1|A2|A|2579
6GZ4|1|A2|A|2580
6GZ4|1|A2|G|2581
*
6GZ4|1|A2|C|2716
6GZ4|1|A2|C|2717
*
6GZ4|1|A2|G|2721
6GZ4|1|A2|A|2722
6GZ4|1|A2|A|2723
6GZ4|1|A2|A|2724
6GZ4|1|A2|A|2725
6GZ4|1|A2|U|2726

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

ribosomal protein uL2

Chain Ag

ribosomal protein eL34

Chain Ap

ribosomal protein eL43